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Table 2 Corresponding database entries for zebrafish β1 sequences

From: Identification of multiple integrin β1 homologs in zebrafish (Danio rerio)

Paralog

Accession Number

Gene Prediction

Genomic Location

Corresponding (or additional) EST

Source of EST

β1–1

DQ149101

GENSCAN00000041635

Chr24

DT075719

whole adult

β1–2

DQ149102

GENSCAN000000132303

Chr24

CF417014

gastrula stage

β1–3

DQ149103

GENSCAN000000132303

Chr24

CK711153

<72 h embryos

β1tr-1

DQ440587

-

-

-

-

β1tr-2

DQ440588

-

-

-

-

β1tr-3

DQ440589

-

-

CN3281395

liver

ESTa

BC0675521

-

-

CN3290426

liver

ESTb

DQ4405902

GENSCAN000000132303

Chr24

DN836198

pooled gut

  1. 1 The complete sequence of ESTa was found to be 100% identical to that of BC067552. A partial sequence of this clone can be found under Genbank Accession number CD285257.
  2. 2 A partial sequence of this clone can be found under Genbank Accession number CF347594.
  3. 3 The sequences of β1–2, β1–3 and ESTb are all contained within a single (inaccurate) gene prediction 2609 residues in length (genome project Zv5).
  4. 4 Latest version of genome project (Zv6).
  5. 5 Identical sequence in coding region but 3'UTR sequence appears to differ. Additional EST BG729583 (kidney).
  6. 6 Other ESTs: CO916860 (olfactory epithelium), CK865233 (testis), CN315944 (liver), CN171841 (kidney), CN320549 (liver).
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BMC Molecular and Cell Biology

ISSN: 2661-8850

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